Volumetric Lung Nodule Segmentation using Adaptive ROI with Multi-View Residual Learning

Accurate quantification of pulmonary nodules can greatly assist the early diagnosis of lung cancer, which can enhance patient survival possibilities. A number of nodule segmentation techniques have been proposed, however, all of the existing techniques rely on radiologist 3-D volume of interest (VOI) input or use the constant region of interest (ROI) and only investigate the presence of nodule voxels within the given VOI. Such approaches restrain the solutions to investigate the nodule presence outside the given VOI and also include the redundant structures into VOI, which may lead to inaccurate nodule segmentation. In this work, a novel semi-automated approach for 3-D segmentation of nodule in volumetric computerized tomography (CT) lung scans has been proposed. The proposed technique can be segregated into two stages, at the first stage, it takes a 2-D ROI containing the nodule as input and it performs patch-wise investigation along the axial axis with a novel adaptive ROI strategy. The adaptive ROI algorithm enables the solution to dynamically select the ROI for the surrounding slices to investigate the presence of nodule using deep residual U-Net architecture. The first stage provides the initial estimation of nodule which is further utilized to extract the VOI. At the second stage, the extracted VOI is further investigated along the coronal and sagittal axis with two different networks and finally, all the estimated masks are fed into the consensus module to produce the final volumetric segmentation of nodule. The proposed approach has been rigorously evaluated on the LIDC dataset, which is the largest publicly available dataset. The result suggests that the approach is significantly robust and accurate as compared to the previous state of the art techniques.Comment: The manuscript is currently under review and copyright shall be transferred to the publisher upon acceptanc

MEDS-Net: Self-Distilled Multi-Encoders Network with Bi-Direction Maximum Intensity projections for Lung Nodule Detection

In this study, we propose a lung nodule detection scheme which fully incorporates the clinic workflow of radiologists. Particularly, we exploit Bi-Directional Maximum intensity projection (MIP) images of various thicknesses (i.e., 3, 5 and 10mm) along with a 3D patch of CT scan, consisting of 10 adjacent slices to feed into self-distillation-based Multi-Encoders Network (MEDS-Net). The proposed architecture first condenses 3D patch input to three channels by using a dense block which consists of dense units which effectively examine the nodule presence from 2D axial slices. This condensed information, along with the forward and backward MIP images, is fed to three different encoders to learn the most meaningful representation, which is forwarded into the decoded block at various levels. At the decoder block, we employ a self-distillation mechanism by connecting the distillation block, which contains five lung nodule detectors. It helps to expedite the convergence and improves the learning ability of the proposed architecture. Finally, the proposed scheme reduces the false positives by complementing the main detector with auxiliary detectors. The proposed scheme has been rigorously evaluated on 888 scans of LUNA16 dataset and obtained a CPM score of 93.6\%. The results demonstrate that incorporating of bi-direction MIP images enables MEDS-Net to effectively distinguish nodules from surroundings which help to achieve the sensitivity of 91.5% and 92.8% with false positives rate of 0.25 and 0.5 per scan, respectively

Dual-Stage Deeply Supervised Attention-Based Convolutional Neural Networks for Mandibular Canal Segmentation in CBCT Scans

Accurate segmentation of mandibular canals in lower jaws is important in dental implantology. Medical experts manually determine the implant position and dimensions from 3D CT images to avoid damaging the mandibular nerve inside the canal. In this paper, we propose a novel dual-stage deep learning-based scheme for the automatic segmentation of the mandibular canal. In particular, we first enhance the CBCT scans by employing the novel histogram-based dynamic windowing scheme, which improves the visibility of mandibular canals. After enhancement, we designed 3D deeply supervised attention UNet architecture for localizing the Volumes Of Interest (VOIs), which contain the mandibular canals (i.e., left and right canals). Finally, we employed the Multi-Scale input Residual UNet (MSiR-UNet) architecture to segment the mandibular canals using VOIs accurately. The proposed method has been rigorously evaluated on 500 and 15 CBCT scans from our dataset and from the public dataset, respectively. The results demonstrate that our technique improves the existing performance of mandibular canal segmentation to a clinically acceptable range. Moreover, it is robust against the types of CBCT scans in terms of field of view